Application of a high-throughput quantitative PCR system for simultaneous monitoring of SARS-CoV-2 variants and other pathogenic viruses in wastewaterArticle Published on 2022-12-202022-11-15 Journal: The Science of the total environment [Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제, [키워드] acute respiratory syndrome Alpha variant analyzed application applied assays can be used collected Community coronavirus coronavirus disease COVID-19 delta variant demonstrated detect eight epidemiologically FIVE Health High-throughput qPCR highlighting increase Japan L452R labor-intensive likelihood Mie N501Y nine nucleotide nucleotide substitution pathogenic virus pathogenic viruses Pathogenic viruses, SARS-CoV-2 Patient PCR positive prevalent qPCR quantitative PCR quarantine reported RNA RT-qPCR SARS-CoV-2 SARS-CoV-2 spike SARS-CoV-2 variant separated Surveillance target tested time-consuming Treatment virus viruses Volume wastewater Wastewater. Yokkaichi [DOI] 10.1016/j.scitotenv.2022.158659 PMC 바로가기
Does timing matter on tocilizumab administration? Clinical, analytical and radiological outcomes in COVID-19Article Published on 2022-11-012022-11-15 Journal: European Journal of Hospital Pharmacy [Category] SARS, 진단, [키워드] 30-Day mortality Administered administration adverse event adverse events analysed Biomarker C-reactive protein clinical Clinical improvement cohorts of patient comparable complementary Complementary therapies coronavirus disease COVID-19 Critical Critical care decrease Efficacy epidemiologically group hospitalised Hypothesis inflammatory parameters knowledge lactate dehydrogenase medication Mortality onset of symptom outcome Patient patients with COVID-19 pharmacological treatment Pneumonia Primary outcome pulmonary medicine Quotient radiological radiological improvement Radiology. randomised controlled trial reductions in SaO_{2} secondary Severe COVID-19 pneumonia statistically significant difference subgroup subgroups the timing therapy Tocilizumab tocilizumab administration two group were recorded while [DOI] 10.1136/ejhpharm-2020-002669 PMC 바로가기
Evidence of co-infections during Delta and Omicron SARS-CoV-2 variants co-circulation through prospective screening and sequencingArticle Published on 2022-11-012022-11-15 Journal: Clinical microbiology and infection : the official [Category] COVID19(2023년), SARS, 변종, 치료기술, 치료제, [키워드] analysis chimeric circulation Co-infection collected COVID-19 Delta Delta and Omicron VOC Epidemic epidemiologically evidence of France generate Genetic Health Infection K417N L452R Mutation nasopharyngeal sample omicron Pandemics pathogenic patients PCR assay polymorphism primer sets profile Recombination recombination event Respiratory samples S-gene mutation Sample SARS-CoV-2 SARS-CoV-2 co-infection SARS-CoV-2 genome SARS-CoV-2 variant screened sequence Sequencing single nucleotide Single nucleotide polymorphism Single nucleotide polymorphism screening SNP SNPs submitted Surveillance variant virus VoC was performed WGS whole genome Whole genome sequencing whole genome sequencing. [DOI] 10.1016/j.cmi.2022.06.030 PMC 바로가기
Infection and Transmission of SARS-CoV-2 B.1.617.2 Lineage (Delta Variant) among Fully Vaccinated IndividualsArticle Published on 2022-10-262022-11-15 Journal: Microbiology Spectrum [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Alpha variant analysis Asia association B.1.1.7 lineage B.1.617.2 Breakthrough infection breakthrough infection. circulating Cluster Complete conducted coronavirus disease COVID-19 Delta delta variant demonstrated determine diagnostic dominant epidemiologically evaluate Evidence Factor genomic genotyping highest increase in independent individual individuals Infection Infectious virus information Isolation Lineage New York PCR peaked performed phylogenetic clusters positive real-time reverse transcriptase Replication SARS-CoV-2 SARS-CoV-2 lineage secretion sequence spread to subset Surveillance the SARS-CoV-2 Transmission transmission clusters transmission of SARS-CoV-2 vaccinated individual vaccinated individuals vaccination rate Viral load viral RNA load viral titer virological assessment virus Virus titration VoC [DOI] 10.1128/spectrum.00563-22 PMC 바로가기
Cov2clusters: genomic clustering of SARS-CoV-2 sequencesArticle Published on 2022-10-192022-11-16 Journal: BMC Genomics [Category] COVID19(2023년), SARS, 유전자 메커니즘, [키워드] Accuracy advance approach bioinformatics Canada Cluster Clustering Combination COVID-19 pandemic epidemiological data epidemiologically Evidence genomic Genomic analysis global public health high accuracy High-resolution identify identifying increase in management mimicking pandemic pathogen Phylogenetic Phylogenetic tree produced producing Public public health Repository SARS-CoV-2 SARS-CoV-2 sequence SARS-CoV-2 sequence data sequence sequencing technology stability Surveillance the disease Transmission viral pathogen WGS whole genome sequence Whole genome sequencing whole genome sequencing. [DOI] 10.1186/s12864-022-08936-4 PMC 바로가기
Genomic surveillance of the Lambda SARS-CoV-2 variant in a global phylogenetic context글로벌 계통 발생학적 맥락에서 Lambda SARS-CoV-2 변이체의 게놈 감시Article Published on 2022-10-012022-09-11 Journal: Journal of medical virology [Category] COVID19(2023년), SARS, 변종, 유전자 메커니즘, 치료기술, [키워드] acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 Analysis carried clade coronavirus country detect determine downloaded Endemic epidemiologically Europe genomic Genomic surveillance GISAID GISAID database identify isolate Lambda Lineage Local local outbreak local outbreaks local outbreaks.. North America occurred Pandemics past Phylogenetic Phylogenetic analysis Phylogenetic relationship prevalent SARS-CoV-2 SARS-CoV-2 variant sequence Sequencing severe acute respiratory syndrome Coronavirus South America spike spike mutation spike mutations Spread Surveillance variant variants of concern virus [DOI] 10.1002/jmv.27889 PMC 바로가기 [Article Type] Article
Urban Determinants of COVID-19 Spread: a Comparative Study across Three Cities in New York StateArticle Published on 2022-10-012022-11-16 Journal: Journal of Urban Health : Bulletin of the New York [Category] COVID19(2023년), SARS, 치료기술, [키워드] agent-based model city Comparative complex computational analysis conditions contribute COVID-19 deaths demographics determinant develop effective Efficacy epidemiologically Evidence favor hospital hospitals identifying immunization Infection initial modulating New New York outcome pandemic reduced Research question Resilient cities Spread spread of COVID-19 state underlie urban Urban design Urban design. vaccination [DOI] 10.1007/s11524-022-00623-9 PMC 바로가기
Integrated genomic surveillance enables tracing of person-to-person SARS-CoV-2 transmission chains during community transmission and reveals extensive onward transmission of travel-imported infections, Germany, June to July 2021Article Published on 2022-10-012022-11-16 Journal: Eurosurveillance [Category] COVID19(2023년), SARS, 유전자 메커니즘, 치료기술, [키워드] circulating Cluster community transmission complex Contact Contact tracing contribute dataset deep backward contact tracing defined downstream epidemiologically Epidemiology European event Evidence genomic Genomic surveillance Germany High-resolution independent Infection infections Nanopore real-time sequencing next generation sequencing onward transmission Phylogenetic analysis provided reveal SARS-CoV-2 SARS-CoV-2 genome SARS-COV-2 infection SARS-CoV-2 infections SARS-CoV-2 isolate SARS-CoV-2 transmission shown Spain Surveillance Transmission travel-associated SARS-CoV-2 infections. viral genome viral strain [DOI] 10.2807/1560-7917.ES.2022.27.43.2101089 PMC 바로가기
Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Omicron Subvariant BA.2 in a Single-Source Community Outbreak단일 출처 커뮤니티에서 중증 급성 호흡기 증후군 코로나바이러스 2(SARS-CoV-2) 오미크론 하위 변종 BA.2의 급속한 확산Article Published on 2022-08-242022-09-11 Journal: Clinical Infectious Diseases: An Official Publicat [Category] SARS, 변종, [키워드] 95% confidence interval acute respiratory syndrome acute respiratory syndrome coronavirus acute respiratory syndrome coronavirus 2 analyzed Asia BA.2 sublineage calculated Cluster Community community outbreak coronavirus coronavirus 2 COVID-19 doubling epidemiological epidemiologically Europe genomic Genomic analysis highlight Hong Kong housing estate. individual information involved lockdown measure Mutation omicron Omicron variant outbreak Oxford Nanopore MinION Patient performed Phylogenetic analysis Rapid respiratory SARS-CoV-2 SARS-CoV-2 Omicron variant sequence Sequencing severe acute respiratory syndrome Coronavirus Surveillance Transmissibility unique variant Viral genome sequencing was performed whole-genome sequencing [DOI] 10.1093/cid/ciac203 PMC 바로가기 [Article Type] Article
Repeated transmission of SARS-CoV-2 in an overcrowded Irish emergency department elucidated by whole-genome sequencing전체 게놈 시퀀싱으로 밝혀진 과밀 아일랜드 응급실에서 SARS-CoV-2의 반복 전파Article Published on 2022-08-012022-09-11 Journal: The Journal of hospital infection [Category] COVID19(2023년), SARS, 변종, 치료기술, [키워드] Analysis assigned B.1.1.7 B.1.1.7 lineage bioinformatics Chain Reaction Cluster Community complex consensus genome Contact tracing COVID COVID-19 COVID-19 pandemic defined demonstrated effort emergency department epidemiologically Genomic epidemiology hospital Hospital overcrowding hospital ward Infection infections Limerick Local maximum-likelihood nasopharyngeal swabs occurred outbreak Outbreak investigation Oxford pangolin Patient Phylogenetic tree polymerase chain polymerase chain reaction Prevent Prevention and control protocol resulting reverse transcriptase SARS-CoV-2 SARS-COV-2 infection SARS-CoV-2 infections sequence Sequencing Single nucleotide polymorphism SNPs surveillance testing threshold transcriptase Transmission transmission of SARS-CoV-2 university Viral RNA viral RNA extracted Viral transmission was performed WGS whole-genome sequencing Whole-genome sequencing. [DOI] 10.1016/j.jhin.2022.04.015 PMC 바로가기 [Article Type] Article